MRIs do not involve exposure to radiation, the entire MRI image is generated from changes in magnetic field, and these magnetic exposures are not considered harmful unless a person has hardware in their body such as a
pacemaker. Therefore, the harmful effects of radiation seen with other imaging modalities such as CT scan and X-ray are not present.
Your son's symptoms could be due to a variety of things, but obviously one concern when involuntary movements of a limb occur are seizures.