This would not cause either the urinary tract
or anal symptoms that you have noted. When condoms are applied prior to sex and
do not break, condom protected sex is safe sex and not associated with meaningful risk for infection. (Incidentally, if the condoms used appeared intact following sex, they were- when condoms fail they break wide open. condoms do not "leak" in small amounts.)
Parts of your experience however did, apparently involve some trauma.